Selected Publication (Refer to my Google Scholar to check the full publication. # denotes student finished the work under my supervision.)
Conference Papers
Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates
[code]
Zhenqiao Song,
Yunlong Zhao,
Wenxian Shi,
Wengong Jin,
Yang Yang,
Lei Li
Proceedings of the 2024 International Conference on Machine Learning (ICML), 2024
SurfPro: Functional Protein Design Based on Continuous Surface
[code]
Zhenqiao Song,
Tinglin Huang,
Lei Li,
Wengong Jin
Proceedings of the 2024 International Conference on Machine Learning (ICML), 2024
Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer
Tinglin Huang,
Zhenqiao Song,
Rex Ying,
Wengong Jin
Thirty-eighth Conference on Neural Information Processing Systems(NeurIPS), 2024
Hire a Linguist!: Learning Endangered Languages with In-Context Linguistic Descriptions
Kexun Zhang,
Yee Man Choi,
Zhenqiao Song,
Taiqi He,
William Yang Wang,
Lei Li
Proceedings of the 57th Annual Meeting of Findings of the Association for Computational Linguistics (ACL Findings), 2024
Functional Geometry Guided Protein Sequence and Backbone Structure Co-Design
[code]
Zhenqiao Song,
Yunlong Zhao,
Wenxian Shi,
Yang Yang,
Lei Li
arXiv:2310.04343
Joint Design of Protein Sequence and Structure based on Motifs
Zhenqiao Song,
Yunlong Zhao,
Yufei Song,
Wenxian Shi,
Yang Yang,
Lei Li
arXiv:2310.02546
Importance Weighted Expectation-Maximization for Protein Sequence Design
[code]
Zhenqiao Song,
Lei Li
Proceedings of the 2023 International Conference on Machine Learning (ICML), 2023
INSTRUCTSCORE: Explainable Text Generation Evaluation with Fine-grained Feedback
Wenda Xu,
Danqing Wang,
Liangming Pan,
Zhenqiao Song,
Markus Freitag,
William Yang Wang,
Lei Li
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing (EMNLP), 2023
MTG: A Benchmarking Suite for Multilingual Text Generation
Yiran Chen#,
Zhenqiao Song*,
Xuanze Wu,
Danqing Wang,
Jingjing Xu,
Jiaze Chen,
Hao Zhou,
Lei Li
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (NAACL Findings), 2022
switch-GLAT: Multilingual Parallel Machine Translation Via Code-Switch Decoder
Zhenqiao Song,
Hao Zhou,
Lihua Qian,
Jingjing Xu,
Mingxuan Wang,
Lei Li
Proceedings of the International Conference on Learning Representations (ICLR), 2021
Triangular Bidword Generation for Sponsored Search Auction
Zhenqiao Song,
Jiaze Chen,
Hao Zhou,
Lei Li
Proceedings of the 14th ACM International Conference on Web Search and Data Mining (WSDM), 2021
Improving Coreference Resolution by Leveraging Entity-Centric Features with Graph Neural Networks and Second-order Inference
Lu Liu,
Zhenqiao Song,
Xiaoqing Zheng,
Xuanjing Huang
arXiv preprint arXiv:2009.04639, 2020
Generating responses with a specific emotion in dialog
Zhenqiao Song,
Xiaoqing Zheng,
Lu Liu,
Mu Xu,
Xuanjing Huang
Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics (ACL), 2019
Journal Papers
Jointly Learning Bilingual Word Embeddings and Alignments
Zhenqiao Song,
Xiaoqing Zheng,
Xuanjing Huang
Journal of Machine Translation, 2021
Exploring Implicit Semantic Constraints for Bilingual Word Embeddings
Jinsong Su,
Zhenqiao Song,
Yaojie Lu,
Mu Xu,
Changxing Wu,
Yidong Chen,
Journal of Neural Processing Letters, 2018
|